PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn354761
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 358aa    MW: 40055.2 Da    PI: 8.6502
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn354761genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94e-06931123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C++C++ F r  nL+ H r+H
  Achn354761  9 YVCEICNQGFQRDQNLQMHRRRH 31
                9*********************9 PP
2zf-C2H216.42.5e-0586108123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C+k +  +s++k H++t+
  Achn354761  86 WVCEKCSKGYAVQSDYKAHLKTC 108
                 58*******************98 PP
3zf-C2H211.30.0011116134523
                 TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                 dCg++Fsr +++  H+ t+
  Achn354761 116 DCGRVFSRVESFIEHQDTC 134
                 9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.58E-6831No hitNo description
Gene3DG3DSA:3.30.160.601.4E-5831IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.97931IPR007087Zinc finger, C2H2
SMARTSM003550.0052931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003551105080IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-477107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.58E-681106No hitNo description
SMARTSM003556086113IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MTLLESDRYV CEICNQGFQR DQNLQMHRRR HKVPWKLLKR DSPEIKKRVF ICPEPTCLHH  60
DPAHALGDLV GIKKHFRRKH SNNKQWVCEK CSKGYAVQSD YKAHLKTCGT RGHSCDCGRV  120
FSRVESFIEH QDTCTVRRVR PELQAFQPAA SSSRTASSTS PSSDNNFGIA PMPRLSATVA  180
PEPVFLGQER HYSSSIDDQQ HNLELQLLPS SSNCASRNCD ENHPTNLKLS IGSGSQETNA  240
RKDALEAARL KEGASEQLKL VMAEKAYAEE ARRQAKKQIE LAELEFANAK RIRQQAQAEL  300
EKAQVLKEQA TKKLSSTILQ ITCHSCKQHF QATAPADHHE PSLAASYMSS AVTEGGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-1884134555Zinc finger protein JACKDAW
5b3h_F5e-1884134555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028080694.10.0zinc finger protein SHOOT GRAVITROPISM 5-like
SwissprotF4IPE31e-141IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A2R6QHZ30.0A0A2R6QHZ3_ACTCH; Protein SHOOT GRAVITROPISM like
STRINGVIT_01s0011g06400.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10222482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-135indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]