PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn354821
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 242aa    MW: 27109.3 Da    PI: 7.9869
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn354821genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.73.9e-131221522656
                 -HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  26 saeereeLAkklgLterqVkvWFqNrRakek 56 
                 s+++++eLA+kl+L  rqV vWFqNrRa+ k
  Achn354821 122 SRKQKQELARKLNLRPRQVEVWFQNRRARTK 152
                 789**************************98 PP
2HD-ZIP_I/II92.54.7e-301231872691
  HD-ZIP_I/II  26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                   ++K+elar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
   Achn354821 123 RKQKQELARKLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 187
                  689***********************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.001115158IPR001356Homeobox domain
SuperFamilySSF466894.6E-11121162IPR009057Homeodomain-like
PfamPF000461.4E-10122152IPR001356Homeobox domain
PROSITE profilePS5007113.264122154IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.4E-12122152IPR009057Homeodomain-like
CDDcd000863.63E-10122155No hitNo description
PROSITE patternPS000270129152IPR017970Homeobox, conserved site
PfamPF021834.3E-10154188IPR003106Leucine zipper, homeobox-associated
SMARTSM003405.1E-26154197IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MATTVSGKWY IIDHNFQIDD WSADLEGSHA TCLGFTSPAD NHRPSKLGNT TMRSFEPSLT  60
LGFCGESYSQ RVAVSELNNK GSNESGELLY RQESGAESFS NGSVKREREA GSEEGEIERV  120
SSRKQKQELA RKLNLRPRQV EVWFQNRRAR TKLKQTEVDC EFLKKCCETL TDENRRLQKE  180
LQELKALKLS QPFYMQMPAA TLTMCPSCER IGGGGGDSTN KSPFTKPHFF NNPFTNSSAA  240
C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146154RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109134.11e-89homeobox-leucine zipper protein HAT9-like
SwissprotP466044e-62HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2R6S1531e-144A0A2R6S153_ACTCH; Homeobox-leucine zipper protein
STRINGXP_008237058.12e-82(Prunus mume)
STRINGEMJ068782e-82(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-52HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]