PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn354831
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 239aa    MW: 26892.8 Da    PI: 8.7147
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn354831genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.84.9e-0838602246
                     T-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46
                     + W+ Ia+ ++ gRt++++k++w++
       Achn354831 38 K-WSIIAAQLP-GRTDNDIKNYWNT 60
                     4.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.458162IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.8E-123372IPR009057Homeodomain-like
SuperFamilySSF466897.34E-83669IPR009057Homeodomain-like
PfamPF002494.2E-63660IPR001005SANT/Myb domain
CDDcd001671.38E-53862No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEQRRWRQTR RREWLSSSSS SSEVRSRQVV SPFALTQKWS IIAAQLPGRT DNDIKNYWNT  60
KLKKKLIAKQ QKEQGGSVFK QEMKRESENF TASEAAVNPI LYWPEVPVPI APLFLDDHQQ  120
AKTNRTNPGN PFDISTTQNR FATSNSMNSA SGTYSELLPN TFDGFKNYTI ELGEIVYKTP  180
REVDGLEDFS GVEMVNYGSS GSGTRSGEST NWGDIKSLVY SSMVSNNDAE DSKYFGLQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028099021.12e-55transcription factor RAX3-like
TrEMBLA0A2R6S1751e-134A0A2R6S175_ACTCH; Transcription factor like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.12e-10myb domain protein 68