PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn355461
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 208aa    MW: 22550.1 Da    PI: 4.5785
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn355461genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.7e-184191155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                + y+GVr +  +g+Wv+eIr+p++   + r++lg+f ++e+Aa+a++ a+++++g
  Achn355461 41 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPSPEMAARAHDVAALSIKG 91
                68*****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-124191IPR001471AP2/ERF domain
PROSITE profilePS5103223.134299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-3142100IPR001471AP2/ERF domain
SMARTSM003802.0E-3442105IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-2142100IPR016177DNA-binding domain
PRINTSPR003677.5E-104354IPR001471AP2/ERF domain
CDDcd000187.01E-3143101No hitNo description
PRINTSPR003677.5E-106581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSTESCSNSD PASPSGSTQS PVDPNLTKIK RIQPDAAAKQ PVYRGVRMRN WGKWVSEIRE  60
PRKKSRIWLG TFPSPEMAAR AHDVAALSIK GDAAVLNFPE LAGLLPRPAS LSPRDVQAAA  120
AKAAAMDGLG GDSRPPQAEE ELCEIVELPS LGASYESNES TRDFVYADSV EAWVYPPPWL  180
QREDDCTGYF TDQTSSQSSF GAVLWDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1837100973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249578.12e-76PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD32e-62DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2R6QZN41e-149A0A2R6QZN4_ACTCH; Dehydration-responsive element-binding protein
STRINGXP_010249578.19e-76(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-61ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]