PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn356291
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MIKC_MADS
Protein Properties Length: 1155aa    MW: 133003 Da    PI: 5.939
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn356291genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.52e-29959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  Achn356291  9 KRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIVFSHRGKLFEYST 59
                79***********************************************96 PP
2K-box691.5e-231181843399
       K-box  33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 +++ h++G+ L+sLslk+Lq+LeqqL+++lk+ Rs+Kn++++e+i+elqkkek +qe+n++L kk +
  Achn356291 118 STKWHYMGQHLDSLSLKDLQNLEQQLDTALKRFRSRKNQIMYESISELQKKEKGIQEQNNMLAKKHK 184
                 6778***********************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.085161IPR002100Transcription factor, MADS-box
SMARTSM004327.8E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-27261IPR002100Transcription factor, MADS-box
CDDcd002653.50E-32259No hitNo description
PRINTSPR004045.2E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.09599189IPR002487Transcription factor, K-box
PfamPF014865.6E-19117182IPR002487Transcription factor, K-box
PfamPF041479.5E-2392461139IPR007276Nucleolar protein 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0032040Cellular Componentsmall-subunit processome
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1155 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KANEISVLCD AEVALIVFSH RGKLFEYSTD  60
ACMVAAFLFS LFFFIFFFGG IHTCTSFYHV LRKTSIDILI DLVAKLDSKV HKNLGQESTK  120
WHYMGQHLDS LSLKDLQNLE QQLDTALKRF RSRKNQIMYE SISELQKKEK GIQEQNNMLA  180
KKHKNLSMDS VSDLITNIRI RSQSENATDM AKNTSSRSTS NNNKKKNTKK NKTGPNALAM  240
KLKTPKQNPF ETIWSRRKFD VLGKKRKGEE RRIGLARSVA IEKALVLRCV VLQRKKTLLK  300
EYEQSEKSSV FIDKRIGEQN EGLGEFDKAI MRSQRERQLK LSKKSKYNLS DGEDDEFEFE  360
DGMSLQGRDD FEDEVPFDDE DDAKTADTGK KSSFLSLNAN DSQIAPNLGL IEGQDNRQKT  420
KKEVMEEIIS KSKFFKAQKA KDKEENEQLI DELDKNFTSL VQSKALLSLT QPNKMNALKA  480
LVNKSISNEF FKKDVVFAPQ NEDTLQQDKP DAYDKLVNEM VLDMRARPSE RTKTPEEIAH  540
EEKERLEELE EERQKRMLAT DDSSDDDGNG SEDADNADNA QRLRSISGDD LGDSFSHDED  600
KRSKRGWIEE ILRRENASDV GSEDDMSSED PECAEDDGDE EGTDKDNDEY EKTQSLKDWE  660
QSDDDDLGTD LEEEEEEEEE EEEEEDGDGG RIDRVDAEKT EENSKTPSTQ LGELPYVIAA  720
PTSLEEFSAL LENRSDSQIV EAIRRIRTCN AISIAAENRK KMQMFYGVLL QYFAVSANKR  780
PLNFKLLNLL VKPLMEMSRE IPYFAAICAR QRLLRTRTRF CEDVKDSEKS CWPTLKTLIL  840
LRLWSMIFPC SDFRHVVMTP ALLLMSEYLM RCPIMSGRDI AIGSFLCSMV LSVTKQSRKF  900
CPEAIMFIHT ILMTAKNRKP GQIQDSQLCP FMELRALSPL LYTHTSVKEI SPLDFLKLMD  960
MPEDSPFFSS DNFRASMLAS VIETLLGFVN VYEGFSSFPE IFLPILKLLP ELAEQELIPN  1020
ALQDKIRDVY QLIEKKSQEH HMLRRPLQMR KQKPVPIKLL NPKFEENFVK GRDYDPDRER  1080
AEMRKLKKHI KREAKGAARE LRKDNYFLFE VKEKDKALVE EERAERYGKA KAFLQEQEHA  1140
FKSGQLGKGG KRRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5oql_B7e-357141129475876Utp2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1816643e-64AF181664.1 Actinidia deliciosa squamosa/apetala1 homolog mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010650046.10.0PREDICTED: nucleolar protein 14
TrEMBLA0A2R6P4060.0A0A2R6P406_ACTCH; Nucleolar protein
STRINGVIT_01s0011g00070.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.16e-58MIKC_MADS family protein