PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn356431

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

MYB_related

Protein Properties

Length: 302aa MW: 33086.4 Da PI: 9.6996

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn356431	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.9	2.8e-14	92	136	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky Achn356431 92 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 136 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.997	85	141	IPR017930	Myb domain
SuperFamily	SSF46689	4.71E-17	87	142	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.3E-17	88	139	IPR006447	Myb domain, plants
SMART	SM00717	1.8E-10	89	139	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-11	91	136	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-11	92	136	IPR001005	SANT/Myb domain
CDD	cd00167	1.69E-9	92	137	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MTSPSCCSES GADRGNSVAS GGSGGEIMLF GVRVKVDPMR KSVSMNNLSQ YEQPQQEASN 60 VAVDLAAVGY ASADEAVHHQ SSGNRERKRG VPWTEEEHKL FLLGLQKVGK GDWRGISRNF 120 VKTRTPTQVA SHAQKYFLRR SNLNRRRRRS SLFDITTESV TAIPMEEEKV HQESKTQPLL 180 PQTLLPPLEA TNINVSQVLP FPVTISPVLV PAQIENPMEK LTLGQVDHAN HNSAKPIRPI 240 PVLPNPNGTM ADQSLNQKLT VDPSPLSLRL SLSSDHNQVS RYSAFQVMSS FNNGDKIISV 300 T*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028064720.1	1e-126	LOW QUALITY PROTEIN: transcription factor MYB1R1-like
Swissprot	Q2V9B0	7e-89	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A346JM64	0.0	A0A346JM64_ACTDE; MYBR4 protein
STRING	XP_009802855.1	1e-102	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2574	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	1e-56	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]