PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn358591
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 241aa    MW: 27913.1 Da    PI: 9.8225
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn358591genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.7e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lvd+++++G  tW++ ++  g+ R++k+c++rw +yl
       Achn358591 14 KGAWTPEEDQILVDYITKHGHATWHSLPKLAGLSRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding44.73.1e-1467166148
                      TSSS-HHHHHHHHHHHHHTTTT.....................................................-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....................................................tWktIartmgkgRtlkqck 41 
                      rg++T+eE+  +++++ +lG++                                                     +W++Ia++++ gRt++++k
       Achn358591  67 RGPFTPEEENTIIQLHGMLGNKllqyylnemktvrefkfrlsvrqhqillffsgelffsfmgifhvvarinlkifRWAAIASKLP-GRTDNEVK 159
                      89***********************************************************************************.******** PP

                      HHHHHHT CS
  Myb_DNA-binding  42 srwqkyl 48 
                      ++w+++l
       Achn358591 160 NFWNSHL 166
                      ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-24564IPR009057Homeodomain-like
PROSITE profilePS5129422.66965IPR017930Myb domain
SMARTSM007173.2E-131363IPR001005SANT/Myb domain
PfamPF002491.1E-151461IPR001005SANT/Myb domain
SuperFamilySSF466891.6E-221589IPR009057Homeodomain-like
CDDcd001671.74E-91661No hitNo description
PROSITE profilePS500908.14262166IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-216587IPR009057Homeodomain-like
SMARTSM007171.5E-1066168IPR001005SANT/Myb domain
PfamPF002493.7E-7139166IPR001005SANT/Myb domain
SuperFamilySSF466893.66E-7141170IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-21142169IPR009057Homeodomain-like
CDDcd001677.01E-6142166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRAPCCEKE LVKKGAWTPE EDQILVDYIT KHGHATWHSL PKLAGLSRCG KSCRLRWTNY  60
LRPDIKRGPF TPEEENTIIQ LHGMLGNKLL QYYLNEMKTV REFKFRLSVR QHQILLFFSG  120
ELFFSFMGIF HVVARINLKI FRWAAIASKL PGRTDNEVKN FWNSHLKNRF FFLGHNLQAS  180
GPTSTSHMAQ WESARVEAEA RLSMDSFLNP SPTSKHDCDY FLRLWNSEVG ESFRKISELS  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-14148827100MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481450.11e-85PREDICTED: myb-related protein Zm38-like isoform X1
TrEMBLA0A346JM661e-114A0A346JM66_ACTDE; MYB13 protein
STRINGVIT_16s0050g00070.t017e-79(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.18e-74myb domain protein 17