PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn359541
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 336aa    MW: 37873 Da    PI: 10.2089
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn359541genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.52.4e-32271330260
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                 +D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp++++itYegeHnh+k
  Achn359541 271 SDEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIITYEGEHNHPK 330
                 69************************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.3E-16223268IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-34258330IPR003657WRKY domain
PROSITE profilePS5081130.641265331IPR003657WRKY domain
SuperFamilySSF1182901.22E-27268330IPR003657WRKY domain
SMARTSM007743.3E-40270330IPR003657WRKY domain
PfamPF031069.0E-28272329IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEEIEEANRA AVECSHRVLR LLSQPQDQIQ NRNLMVETGE AVIRFKRVAS LLNTGLGHAR  60
ARKLKKIQTH FSQDLLLENL MRETDPQPKS VQLLQRNFLE NPIQEMSSIV KSSLTLGSPL  120
LNEKNPFEIA QHTQSHHFLL QQQQKLIQLQ QQQMKQQAEI MYRRSNSGHS LNFDSSTCTP  180
TMSSTRSFVS SLSIDGSVAN LDGNAFNLSG AAGSSDRNSH HHKQSCSRRG DDGSGKCRSN  240
GRCHCSKKRK HRVKRSIKVP AVSSKLADIP SDEYSWRKYG QKPIKGSPHP RGYYKCSSMR  300
GCPARKHVER CLEDPSMLII TYEGEHNHPK LPLQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-212663321075WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028124442.11e-178probable WRKY transcription factor 21
SwissprotO043361e-119WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A2R6PP530.0A0A2R6PP53_ACTCH; WRKY transcription factor
STRINGXP_010038933.11e-166(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-120WRKY DNA-binding protein 21