PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn359571
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 494aa    MW: 54752.6 Da    PI: 6.6167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn359571genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.5e-13347393455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Achn359571 347 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITDLQ 393
                 699***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-4349227IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474596.94E-19341412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.876343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.31E-14346393No hitNo description
Gene3DG3DSA:4.10.280.106.2E-17347412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10347393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-16349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MGEKVWLSAE DKGMVESVLG SEAFEFLLAS AAGKVLSEFV SSAGDLGVQQ ELCKIVEASN  60
WSYAIFWQVS KLKSGNLALI WGDGHCREPK GSEVETGSGS GDRTLEVGDR RKRVLQKLRT  120
SFGGSEEDNF AAKLDWVSDV EMFYLTSMYY SFPFDKPSSP SQSFNTGRVI WASNTKNCLE  180
HYQSRSYLAK LARFETVVFV PLKSGVVELG SVNSVSEEPN LIRVVKTTLG GPKPVQGKVV  240
PKIFGHELSI GGSKSLSMAI SFSPKVEDDS RFTSESYELQ AVGTNQVYGN LSSGYQNGGE  300
SKLFPQINQV NVGDLEHGQD DMLIQQDERK PRKRGRKPAN GREVPLNHVE AERQRREKLN  360
QRFYALRAVV PNISKMDKAS LLGDAISYIT DLQGRIRLLE AEKYMADNTQ QQCTVPEIDF  420
QARHEDAVVR VSYPLDSHPV SGVIKTFREL QVTAQESRVS TTENGEIVHT FSIRTQSDAA  480
EHLKEKLVAA FSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-28341415276Transcription factor MYC2
5gnj_B7e-28341415276Transcription factor MYC2
5gnj_E7e-28341415276Transcription factor MYC2
5gnj_F7e-28341415276Transcription factor MYC2
5gnj_G7e-28341415276Transcription factor MYC2
5gnj_I7e-28341415276Transcription factor MYC2
5gnj_M7e-28341415276Transcription factor MYC2
5gnj_N7e-28341415276Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328336RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028107222.10.0transcription factor bHLH3-like
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A2R6PP650.0A0A2R6PP65_ACTCH; Transcription factor bHLH3 like
STRINGPGSC0003DMT4000516720.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66692433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-166bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]