PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn359661

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

ERF

Protein Properties

Length: 217aa MW: 24266.1 Da PI: 4.9275

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn359661	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.8	1.3e-18	89	139	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd + ng r++lg+f++aeeAa a+++a+ + +g Achn359661 89 SYRGVRRRP-WGKFAAEIRDSTRNG--IRVWLGTFDSAEEAALAYDQAAFSVRG 139 69*****.******44465..********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	6.32E-30	88	148	No hit	No description
PROSITE profile	PS51032	22.972	89	147	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.9E-30	89	148	IPR001471	AP2/ERF domain
SMART	SM00380	2.9E-36	89	153	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.18E-22	89	149	IPR016177	DNA-binding domain
Pfam	PF00847	2.9E-13	89	139	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-10	90	101	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-10	113	129	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0009873	Biological Process	ethylene-activated signaling pathway
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MNSQFTQYPY LDDSPESSLG SPQSFSWDDL LFYHNSLPFN VNDSEEMLLL GVLAEGASKE 60 SSETVSSGGI KEEEVTSVAK DQKPVKEKSY RGVRRRPWGK FAAEIRDSTR NGIRVWLGTF 120 DSAEEAALAY DQAAFSVRGS MAVLNFPVER VKDSLREMKY GCEEGCSPVV ALKKRHSMRE 180 RSSYKRNKAN KEVKVDNVVI LEDLGAEYLE ELLNSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-28	85	149	1	65	ATERF1
3gcc_A	1e-28	85	149	1	65	ATERF1
5wx9_A	3e-28	90	149	15	74	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269\|PubMed:23057995, ECO:0000269\|PubMed:28733419}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00374	DAP	Transfer from AT3G23240	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269\|PubMed:28733419}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ869861	0.0	GQ869861.1 Actinidia deliciosa ethylene response factor 10 (ERF10) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017234033.1	2e-96	PREDICTED: ethylene-responsive transcription factor 1B-like
Swissprot	A0A3Q7I5Y9	2e-80	ERFC3_SOLLC; Ethylene-response factor C3
TrEMBL	A0A2R6PP94	1e-157	A0A2R6PP94_ACTCH; Ethylene-responsive transcription factor 1B like
STRING	XP_010262305.1	1e-92	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23240.1	2e-65	ethylene response factor 1

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Pirrello J, et al. Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene. BMC Plant Biol., 2012. 12: p. 190 [PMID:23057995] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419]