PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn359751

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 259aa MW: 29269.8 Da PI: 6.1622

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn359751	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.2	1.1e-42	10	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrF P+deelv++yL kk+++++ v+k +d+++++ ++L k +++ewyfFs rd+kyatg r+nrat+sgyWkatgkd+++++ +++ Achn359751 10 LPPGFRFYPSDEELVCHYLYKKIANEQ-----VLKGTDLVEIDLHTLA---KPNSNEWYFFSFRDRKYATGYRANRATTSGYWKATGKDRTIHDPrTRA 100 79********************998.....5789999999999996...44679**********************************95566 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 g +ktLvfy++rap+g kt W+mhe+rle Achn359751 101 IAGKRKTLVFYRNRAPNGIKTGWIMHEFRLE 131 689***********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-51	8	149	IPR003441	NAC domain
PROSITE profile	PS51005	47.63	10	149	IPR003441	NAC domain
Pfam	PF02365	1.3E-26	11	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MGLRDIGASL PPGFRFYPSD EELVCHYLYK KIANEQVLKG TDLVEIDLHT LAKPNSNEWY 60 FFSFRDRKYA TGYRANRATT SGYWKATGKD RTIHDPRTRA IAGKRKTLVF YRNRAPNGIK 120 TGWIMHEFRL ENPHVTPKED WVLCRVFHKS NGSKNSPPNV LDSVTDQTMI TSFSQTPPHQ 180 NQNPNDSTIQ NPSALSPNLL QLSRDIINDA SIDEVNSKCD DEYGFLFDLG FEESCLGGGV 240 PQNLEEMICD DDGSLVFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	5e-41	9	155	19	174	NAC domain-containing protein 19
3swm_B	5e-41	9	155	19	174	NAC domain-containing protein 19
3swm_C	5e-41	9	155	19	174	NAC domain-containing protein 19
3swm_D	5e-41	9	155	19	174	NAC domain-containing protein 19
3swp_A	5e-41	9	155	19	174	NAC domain-containing protein 19
3swp_B	5e-41	9	155	19	174	NAC domain-containing protein 19
3swp_C	5e-41	9	155	19	174	NAC domain-containing protein 19
3swp_D	5e-41	9	155	19	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028111304.1	1e-131	NAC domain-containing protein 21/22-like
Swissprot	Q9FLJ2	3e-51	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2R6PPA4	0.0	A0A2R6PPA4_ACTCH; Protein CUP-SHAPED COTYLEDON 3 like
STRING	EOX94424	1e-119	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1882	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	2e-80	NAC domain containing protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]