PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn359861
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 186aa    MW: 20487.8 Da    PI: 6.2228
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn359861genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26069.47.7e-22773166
      DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAe 66
                +C aCk+lrrkC+k+Cv+apyf++++ +++fa++hk+FGasnv+kll++lp  + ++ ++sl  +A 
  Achn359861  7 PCGACKFLRRKCVKGCVFAPYFCHDEgASHFAAIHKVFGASNVSKLLAHLPVVNLQAQLASLKEQAA 73
                7***********************9989***********************9999999999976654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.5566110IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-20773IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCVK GCVFAPYFCH DEGASHFAAI HKVFGASNVS KLLAHLPVVN  60
LQAQLASLKE QAARTFSANP SERFNGKFPN PPQDVQSWFQ CENSSRMPQL DQNILFGNFG  120
NNPYFENGHM NPNSFPIKPE ENASFSGFEE ASQSMDSIDL QTNGQWPFQD DANELPSMAF  180
GYIQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-19372775LOB family transfactor Ramosa2.1
5ly0_B7e-19372775LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:15659631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028071925.12e-72LOB domain-containing protein 29-like
SwissprotQ9SLB65e-35LBD17_ARATH; LOB domain-containing protein 17
TrEMBLA0A2R6PP631e-126A0A2R6PP63_ACTCH; LOB domain-containing protein
STRINGVIT_07s0005g03020.t016e-71(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84462230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.12e-37LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]