PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn363471
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 238aa    MW: 27002.9 Da    PI: 4.8245
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn363471genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.1e-0818412246
                     T-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46
                     ++W+ I++ ++ gRt++++k++w++
       Achn363471 18 HRWSIISAQLP-GRTDNDIKNYWNT 41
                     57*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.424147IPR017930Myb domain
CDDcd001679.34E-61543No hitNo description
Gene3DG3DSA:1.10.10.602.3E-111653IPR009057Homeodomain-like
SuperFamilySSF466897.41E-81649IPR009057Homeodomain-like
PfamPF002494.7E-61741IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MATLLSRKDQ TCPSFETHRW SIISAQLPGR TDNDIKNYWN TKLKKKLMGN QRKEQQARRA  60
KQEMKRESEI SMASDAMNTI IPYWPEPNLS MPTVKLNQEN HHLKDQEFLK KFPGSIEGRF  120
IDDGQETNIN SENFRYPFDN STTQDQLYDN SINTFASTPS QVPNIFEGFN NYPIEIGELV  180
CNTPQQFDDF SLVDMVNGTS SGESTHWGDT SSEVLYPAMV SNYGLGYSNS PVNGGVY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028082936.17e-63transcription factor RAX3
TrEMBLA0A2R6RKY11e-161A0A2R6RKY1_ACTCH; Transcription factor like
STRINGVIT_00s1352g00010.t015e-56(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-14myb domain protein 36