PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn363591

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

MYB_related

Protein Properties

Length: 295aa MW: 31932.4 Da PI: 8.9967

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn363591	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38	3.7e-12	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT eE+ l+ +v+++G g W+tI + R+ ++k++w++ Achn363591 5 KQKWTSEEEAALKAGVTKYGAGKWSTILKDPEfsillYSRSNVDLKDKWRN 55 79************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.912	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	7.33E-16	2	59	IPR009057	Homeodomain-like
SMART	SM00717	9.2E-7	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-14	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	7.3E-8	5	56	IPR001005	SANT/Myb domain
CDD	cd11660	3.07E-19	6	57	No hit	No description
SuperFamily	SSF46785	2.61E-17	115	190	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.2E-16	116	188	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	2.1E-18	116	181	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	23.927	118	186	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	1.9E-12	120	179	IPR005818	Linker histone H1/H5, domain H15
CDD	cd00073	7.47E-11	120	180	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MGAPKQKWTS EEEAALKAGV TKYGAGKWST ILKDPEFSIL LYSRSNVDLK DKWRNMNVAA 60 NGWGSRSRVR VASKSNQQIV KDDDKALSTV SQSDTEIVDA QPLAGSNGTS ENASSKKPIP 120 RLDNLILEAI TNLKEPRGSS RAAIAIYIEE RYLAPENLER LLASTLKLLT ENGKLVKVKH 180 QFRIAPPSIH TDVKKGSSPL FLEGKQKNSP KVDKNEIKIL SKSQIDAELE KMKGMTAQEA 240 AAAAALAVAE AEAAIAEAEE AAREAEKAEA EAEAAQLFAE AAMKALKCRT VCTW*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028111333.1	1e-124	telomere repeat-binding factor 1-like isoform X1
Refseq	XP_028111334.1	1e-124	telomere repeat-binding factor 1-like isoform X1
Refseq	XP_028111335.1	1e-124	telomere repeat-binding factor 1-like isoform X1
Swissprot	Q8VWK4	6e-73	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	A0A2R6RKY2	0.0	A0A2R6RKY2_ACTCH; Single myb histone like (Fragment)
STRING	cassava4.1_012631m	1e-102	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5122	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	2e-73	telomere repeat binding factor 1

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]