PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn363841
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 206aa    MW: 22601.9 Da    PI: 10.1243
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn363841genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-171362255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Achn363841 13 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVYCLRG 62
                59*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-351376IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-301371IPR001471AP2/ERF domain
PROSITE profilePS5103221.9831370IPR001471AP2/ERF domain
CDDcd000184.56E-271472No hitNo description
PRINTSPR003679.1E-111425IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-211471IPR016177DNA-binding domain
PfamPF008471.2E-101462IPR001471AP2/ERF domain
PRINTSPR003679.1E-115272IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEEGGGKRKN ERPYKGIRMR KWGKWVAEIR EPNKRSRIWL GSYSTPVAAA RAYDTAVYCL  60
RGPTARLNFP DLVAGGSGSA GDMSAAAIRR KAIEVGSRVD ALETSGSVAA GHGHGHAPSS  120
GFKPCWFEEK PDLNKKPVPE DPDANDDWAA LTTFPLVIIP TFIMVKLARQ KTQVNLRSKE  180
YGFHLPTFLR HQQLEGGDIL FLAII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-15178180Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019183691.13e-70PREDICTED: ethylene-responsive transcription factor ERF011-like
SwissprotO221743e-52ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A2R6RL711e-104A0A2R6RL71_ACTCH; Ethylene-responsive transcription factor
STRINGPGSC0003DMT4000102287e-66(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.12e-45DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]