PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn364271
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 232aa    MW: 26376.9 Da    PI: 8.587
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn364271genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.42.1e-121151432856
                 HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  28 eereeLAkklgLterqVkvWFqNrRakek 56 
                 ++++eLA+kl+L  rqV vWFqNrRa+ k
  Achn364271 115 KQKQELARKLNLRPRQVEVWFQNRRARTK 143
                 799************************98 PP
2HD-ZIP_I/II90.91.5e-291141782691
  HD-ZIP_I/II  26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +++K+elar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk++y++l++en+rL+kev++L+ +l
   Achn364271 114 QKQKQELARKLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCYETLTDENRRLQKEVQDLK-AL 178
                  589***********************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.00386149IPR001356Homeobox domain
CDDcd000869.50E-9114146No hitNo description
PfamPF000467.4E-10115143IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-11115143IPR009057Homeodomain-like
PROSITE profilePS5007112.811115145IPR001356Homeobox domain
SuperFamilySSF466894.28E-10115153IPR009057Homeodomain-like
PROSITE patternPS000270120143IPR017970Homeobox, conserved site
SMARTSM003402.1E-23145188IPR003106Leucine zipper, homeobox-associated
PfamPF021832.3E-10145179IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGSDHDDISN TVLVLGLGFS STPVQNPSQA DDQRPNNKPL IFEPSLSLGL CGETYRNNQV  60
EKESDWLVLY REESGASSFS NASVKREREM GSEEVEIERV WGRDKKWRII LNLQKQKQEL  120
ARKLNLRPRQ VEVWFQNRRA RTKLKQTEVD CELLKKCYET LTDENRRLQK EVQDLKALKL  180
AQPLYMATLT MCPSCERISG NGGGDTSNSP LTMAPKTHFL RKPFSNPSTA C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137145RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109134.14e-89homeobox-leucine zipper protein HAT9-like
SwissprotP466042e-55HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2R6RKV81e-155A0A2R6RKV8_ACTCH; Homeobox-leucine zipper protein
STRINGcassava4.1_013986m6e-84(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.19e-58HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]