PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn364801
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family AP2
Protein Properties Length: 436aa    MW: 48239.2 Da    PI: 6.8457
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn364801genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.33.2e-07132153122
         AP2   1 sgykGVrwdkkrgrWvAeIrdp 22 
                 s+y+GV++++++grW+++I+ +
  Achn364801 132 SQYRGVTFYRRTGRWESHIWAY 153
                 78*****************984 PP
2AP240.56.7e-13205255155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV+ +k  grW+A+   +     +k+++lg f+ + eAa+a+++a+ k +g
  Achn364801 205 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 255
                 89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-6132172IPR016177DNA-binding domain
SMARTSM003807.5E-9133176IPR001471AP2/ERF domain
PfamPF008475.6E-8205255IPR001471AP2/ERF domain
CDDcd000182.60E-24205265No hitNo description
SuperFamilySSF541711.11E-16205264IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-15206263IPR001471AP2/ERF domain
PROSITE profilePS5103215.079206263IPR001471AP2/ERF domain
SMARTSM003802.1E-31206269IPR001471AP2/ERF domain
PRINTSPR003673.9E-6207218IPR001471AP2/ERF domain
PRINTSPR003673.9E-6245265IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MLDLNLAVMP TDSNSDGQMD DSGASNSSLF NVETSRVAGD EELSSTHDNT FAYSFGILKN  60
YESEENNANR EARLGFVAKQ LFPASDGGGG REWLDLSCKA ASSGGVAEQK GLVHQQKQQV  120
KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WAYDRAAIKF RGPDADINFN ISDYDEDLTQ  180
MKNLTKEEFV HILRRHSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDNEV  240
EAARAYDKAA IKCNGKEAVT NFEPSTYEKE LSSEAENGEN NHNLDLNLGI TTNYFADGQR  300
GNNDLNSGLH YHCGPTDMHA SIRAENSAPT MATQPPHGQI MVSDHPPLWR GVNSNVFPIY  360
EGRAIEKGME FYSSPSWAWQ GPFSRTASLP LFSTAASSGF ATVAASSAAV HQPQFLNTTF  420
QSQYPPPITN SNNIS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028097115.10.0APETALA2-like protein 3 isoform X1
RefseqXP_028097116.10.0APETALA2-like protein 3 isoform X1
SwissprotB8AXC32e-91AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A2R6R7Z50.0A0A2R6R7Z5_ACTCH; Floral homeotic protein like
STRINGXP_009606014.11e-152(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-97related to AP2.7