PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn365871

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

WRKY

Protein Properties

Length: 553aa MW: 59870.2 Da PI: 7.1273

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn365871	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.5	1.5e-29	211	270	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed ++++ tYeg+Hnh+ Achn365871 211 MQDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSILISTYEGTHNHP 270 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.5E-31	196	272	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-26	204	272	IPR003657	WRKY domain
PROSITE profile	PS50811	28.024	206	272	IPR003657	WRKY domain
SMART	SM00774	1.5E-34	211	271	IPR003657	WRKY domain
Pfam	PF03106	6.6E-26	212	270	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence Send to blast
MEVALRKSGE EGVIKQERRV ESSIGEDGCK EKIFLKDNQL ESANAEMGEV REENQRLRMY 60 LNRMMKDYQN LQMQFFDIVN QETKESTNTA QSDQEMTEEP ELVSLSLGRT SSDPRKDEKA 120 IRKGKEDQQD KEGLALGLHS NFEVSKTGPI DESSIKPSPE NSQEVNKEAG ESWPPQKGLK 180 TVRSEDDEIS QHNPVKKARV SVRVRCDTPT MQDGCQWRKY GQKIAKGNPC PRAYYRCTVA 240 PSCPVRKQVQ RCAEDMSILI STYEGTHNHP LPLSATAMAS TTSAAASMLL SSSSTSETAP 300 ASSAGLNFYL SNHNSKPRPF YLPNSSISSS PSYPTITLDL TSTTSSSSYH NINNKIINPN 360 FLSSAPGYNS SPNLNFSSLE SNPIPMSWNS YGTQPYNKNN QIGSSLNFSR QAQENFYTSL 420 MQKSLLNPNS TQQAQPQDTI AAATKAITSD PSFQSALAAA LTSIIGSNGG GGGGGGGNLG 480 FQIGKNSKLG ETFPFVSNFP STSQNGNKCS SSYLNGSTSV TNSQLFLQPP LPFPSSKSKS 540 TSPGGGGDHG SD*

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence Send to blast

MEVALRKSGE EGVIKQERRV ESSIGEDGCK EKIFLKDNQL ESANAEMGEV REENQRLRMY  60
LNRMMKDYQN LQMQFFDIVN QETKESTNTA QSDQEMTEEP ELVSLSLGRT SSDPRKDEKA  120
IRKGKEDQQD KEGLALGLHS NFEVSKTGPI DESSIKPSPE NSQEVNKEAG ESWPPQKGLK  180
TVRSEDDEIS QHNPVKKARV SVRVRCDTPT MQDGCQWRKY GQKIAKGNPC PRAYYRCTVA  240
PSCPVRKQVQ RCAEDMSILI STYEGTHNHP LPLSATAMAS TTSAAASMLL SSSSTSETAP  300
ASSAGLNFYL SNHNSKPRPF YLPNSSISSS PSYPTITLDL TSTTSSSSYH NINNKIINPN  360
FLSSAPGYNS SPNLNFSSLE SNPIPMSWNS YGTQPYNKNN QIGSSLNFSR QAQENFYTSL  420
MQKSLLNPNS TQQAQPQDTI AAATKAITSD PSFQSALAAA LTSIIGSNGG GGGGGGGNLG  480
FQIGKNSKLG ETFPFVSNFP STSQNGNKCS SSYLNGSTSV TNSQLFLQPP LPFPSSKSKS  540
TSPGGGGDHG SD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-19	198	272	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028120991.1	0.0	probable WRKY transcription factor 72 isoform X1
Swissprot	A0A3Q7GFB5	1e-150	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A2R6QGZ7	0.0	A0A2R6QGZ7_ACTCH; WRKY transcription factor 72
STRING	XP_010256554.1	1e-173	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	7e-67	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]