PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn366911
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 337aa    MW: 37974.1 Da    PI: 9.2533
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn366911genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-071842072246
                      T-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  22 gtWktIartmgkgRtlkqcksrwqk 46 
                      + W++Ia++++ gRt++++k+ w++
       Achn366911 184 PKWSKIASHFP-GRTDNEIKNCWNT 207
                      48*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0043140211IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-11147213IPR009057Homeodomain-like
SuperFamilySSF466898.16E-8183214IPR009057Homeodomain-like
CDDcd001672.21E-5186207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009534Cellular Componentchloroplast thylakoid
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSNSSRPYEE ALIKHTLISA RTQKPCQHIK QRVFVVKAKG KKGLMSRQFN RPPPPLPKIE  60
DDGNPRFVVF IRMANVYLWY PLSIISGGTT AKIMVAAKDN FLGKYIYKDT LARNLAAVID  120
RENNNLRAAL ATSDVIELPT QAEIKTVIDK VKDFFGDAKE SFGKLTALDV NTTEKSEEKP  180
EEKPKWSKIA SHFPGRTDNE IKNCWNTRIK KKLKVLGLDP VTHKPIEQSG VFSAKDKGVL  240
ESNSSRNQEN NFELNLQDNR GSRDDEMPQR EGKSNIGQQF NEIWGCLDVG SSAISQTKPS  300
NAFYAGMSED FPQHWIDSPN NLLLWDDFNN LEGIFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13642KAKGKKG
Functional Description ? help Back to Top
Source Description
UniProtInvolved in photoprotection. Forms a complex with LQY1 that is involved in the repair and reassembly cycle of the PSII-LHCII supercomplex under high-light conditions. May function in guiding the release of psbC from PSII core monomers. {ECO:0000269|PubMed:24632535}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated at the transcription level by high light. {ECO:0000269|PubMed:24632535}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021667483.13e-88protein HHL1, chloroplastic isoform X1
SwissprotQ8LDL06e-84HHL1_ARATH; Protein HHL1, chloroplastic
TrEMBLA0A2R6RFL01e-118A0A2R6RFL0_ACTCH; Uncharacterized protein
STRINGCagra.2261s0013.1.p3e-84(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.16e-15myb domain protein 61
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Jin H, et al.
    HYPERSENSITIVE TO HIGH LIGHT1 interacts with LOW QUANTUM YIELD OF PHOTOSYSTEM II1 and functions in protection of photosystem II from photodamage in Arabidopsis.
    Plant Cell, 2014. 26(3): p. 1213-29
    [PMID:24632535]