PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn367441
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 255aa    MW: 28462.3 Da    PI: 8.1488
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn367441genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.3e-1261107354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 r+h+e+E+rRR+riN  +  Lr+l+P        K++Ka+ L ++ +++k+L
  Achn367441  61 RNHSEAEKRRRERINGHLTSLRSLIPDT-----NKMDKASLLAEVLNHLKEL 107
                 58*************************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.61858107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.84E-1161109No hitNo description
PfamPF000101.7E-961107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-1361113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1362123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-1164113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00792146213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEFSSSFDGF SKNHALQGII RGGSSSSSSL VLDSERGELV KAMSRPVQKG VKAEKALEAL  60
RNHSEAEKRR RERINGHLTS LRSLIPDTNK MDKASLLAEV LNHLKELRRN AAEATKNILV  120
PMDIDEVRVE QHDGGSDGDS CAIRASLCCD FKHEILSDLR QALDALHLKT VRAEIATFGG  180
SMIYVFFITC CKDGNIDYNE RCRLLASSIR HTIRSVLDKF YASEEISSRS TLSNKRRRVP  240
FFESSNLSSL EDLW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234238KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028092207.11e-132transcription factor bHLH30-like
TrEMBLA0A2R6QXL21e-180A0A2R6QXL2_ACTCH; Transcription factor bHLH30 like
STRINGXP_009611307.11e-107(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA119892123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-33bHLH family protein