PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn367721
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 27072.1 Da    PI: 10.0036
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn367721genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.41.4e-312372150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Achn367721 23 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 72
                79***********************************************8 PP
2K-box46.81.2e-16961414388
       K-box  43 LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                 +++ + +eL++Le +Lek++++iRskKnell+++ie++qk+  +l+
  Achn367721  96 ISESNTQELKNLEGRLEKAISRIRSKKNELLFAEIEHMQKRVINLR 141
                 667799***********************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006634.1321575IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-421574IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-331687IPR002100Transcription factor, MADS-box
CDDcd002657.82E-451689No hitNo description
PRINTSPR004044.0E-331737IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001771IPR002100Transcription factor, MADS-box
PfamPF003198.4E-272471IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-333752IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-335273IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.0166195IPR002487Transcription factor, K-box
PfamPF014864.4E-1096140IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAFPNQESEG SSRKMGRGKI EIKRIENTTN RQVTFCKRRN GLLKKAYELS VLCDAEVALI  60
VFSSRGRLYE YANNSVRTTI DRYKKACSDV LNTGSISESN TQELKNLEGR LEKAISRIRS  120
KKNELLFAEI EHMQKRVINL RIYPFTLIDY LPIFIFIHAL LNIFGMFMKG LRNFKHSFIA  180
ENERAQQQMN LMQGAEYQGM PSQQYDARNF LPVNLLEPNQ QYSRQDQTAL QLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-201583169Myocyte-specific enhancer factor 2B
1tqe_Q2e-201583169Myocyte-specific enhancer factor 2B
1tqe_R2e-201583169Myocyte-specific enhancer factor 2B
1tqe_S2e-201583169Myocyte-specific enhancer factor 2B
6c9l_A2e-201583169Myocyte-specific enhancer factor 2B
6c9l_B2e-201583169Myocyte-specific enhancer factor 2B
6c9l_C2e-201583169Myocyte-specific enhancer factor 2B
6c9l_D2e-201583169Myocyte-specific enhancer factor 2B
6c9l_E2e-201583169Myocyte-specific enhancer factor 2B
6c9l_F2e-201583169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7544993e-79AB754499.1 Rhododendron macrosepalum RmAG1-1 mRNA for AGAMOUS like protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656928.11e-101PREDICTED: MAD-box transcripion factor isoform X2
RefseqXP_019078770.11e-101PREDICTED: MAD-box transcripion factor isoform X3
SwissprotQ93XH43e-96MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A2R6QXA51e-123A0A2R6QXA5_ACTCH; Floral homeotic protein like (Fragment)
STRINGVIT_12s0142g00360.t011e-93(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-81MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]