PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn367821
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 237aa    MW: 27116.3 Da    PI: 5.0549
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn367821genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.52.4e-181461149
         NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49
                + pGfrFhPtdeelv +yL++kve+k+l++ e i++vdiyk++PwdLp+
  Achn367821 14 MLPGFRFHPTDEELVGFYLRRKVEKKSLTI-ELIQQVDIYKFDPWDLPN 61
                579*************************99.89**************94 PP
2NAM34.94.6e-11649597128
         NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                 g+++glkk+Lv+y+g++ kg+kt+W+mhe+rl
  Achn367821  64 GATIGLKKSLVYYRGSTGKGTKTEWMMHEFRL 95 
                 6789**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-3310140IPR003441NAC domain
PROSITE profilePS5100515.74314168IPR003441NAC domain
PfamPF023651.6E-151695IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MNISGSKSRD NDVMLPGFRF HPTDEELVGF YLRRKVEKKS LTIELIQQVD IYKFDPWDLP  60
NGGGATIGLK KSLVYYRGST GKGTKTEWMM HEFRLPPSPN NNQHITGTAA RNISTDQEAV  120
RQLLKNGWQE VWTLCRIFKR NATYKIQKKY IPHDEEEEED TVTATKQSSL ESDITHEHER  180
NDPLAVDQKK NEEAPLPPPP PPYSALIWDD DFFRDGNWED LTSVVELAID PSNQSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-217955140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307563.16e-60transcription factor JUNGBRUNNEN 1 isoform X1
TrEMBLA0A2R6QXD81e-144A0A2R6QXD8_ACTCH; Transcription factor JUNGBRUNNEN 1 like
STRINGPOPTR_0005s22710.12e-59(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1649745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-45NAC domain containing protein 42