PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn368061
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 271aa    MW: 30389.9 Da    PI: 9.3283
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn368061genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.14.5e-114668527
                --SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                 C+++ rtG C++G++C+F+H+p
  Achn368061 46 DCSYYIRTGLCRFGATCRFNHPP 68
                7********************97 PP
2zf-CCCH37.63.6e-1289113327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C+++++tGtCk+G++CkF+H++
  Achn368061  89 HAECQYYLKTGTCKFGATCKFHHPR 113
                 689********************96 PP
3zf-CCCH37.63.7e-12137159527
                 --SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                 +C ++++tG+Ck+G++CkF+H++
  Achn368061 137 ECAYYLKTGQCKFGSTCKFHHPQ 159
                 7********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS50103134169IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-44168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-54669IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-74668IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-44767IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.04286114IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-586113IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-989113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-789115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-592113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244132160IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5132159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6135160IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-10137159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4138158IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEFDARIPMT RPDVPSFDED TLWQMNLMSN EAMQSGPYPV REGELDCSYY IRTGLCRFGA  60
TCRFNHPPNR KLAIATARMK GEYPERIGHA ECQYYLKTGT CKFGATCKFH HPRDKAGISG  120
RVPVNILGYP LRPNEIECAY YLKTGQCKFG STCKFHHPQP SNMMVSLSGS PVYPSVHSPT  180
TPGQQSYPGG IANWPLSRAS FIPSPRWQSP SSYSPLILPQ GVLSVPGWNA YSVSFSFLVF  240
RNAVMIMRLL VYIRGNRLPF RMGHGINFDT *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028056281.11e-148zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF91e-124ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2R6PKS61e-172A0A2R6PKS6_ACTCH; Zinc finger CCCH domain-containing protein ZFN-like
STRINGVIT_04s0023g00370.t011e-142(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-106zinc finger protein 1