PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn368071
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 789aa    MW: 87854 Da    PI: 5.6468
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn368071genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.32e-1181107127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C+f+++tG Ck+G+ C+F+H++
  Achn368071  81 PGHPECQFYMKTGDCKFGAVCRFHHPR 107
                 5789*********************96 PP
2zf-CCCH37.53.8e-12695720227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 +++lC f++r+G Ck+G++CkF H++
  Achn368071 695 GEPLCIFYSRYGSCKFGPSCKFDHPM 720
                 789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.93980108IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-580107IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-882107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-584110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-486108IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037693721IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-6693720IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9695720IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-5696720IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4698718IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MFPDSSTAIC AYREVRFQGQ LGSVSTSENQ QTAENNQIYG TSWQSEAANA GSQGSISSYR  60
SGTVPIGYYA LQRENVFPER PGHPECQFYM KTGDCKFGAV CRFHHPRERL IPAPDCVLSP  120
IGLPLRPGKD CYTGFRVWDW VEGCGKCSTR FWASGWREGD LSLGWADYKK DANGPHRGVN  180
EMEWRTGKWA KSRVSRIESR TLRPAQDVGS HMKGLVGVYE ETVEDPTPMG CNSPNHTQEA  240
NILWYALANL ERGDTRSEED IATSDMDERS SWKPGRSEQA EGGSEGPNDD IRKGKSLSIQ  300
VQSDDVIKER IICDIEPLEC CQAVPISLAG LVVDEIGQDD GGDWLMERGM EMGMEDEAAR  360
LFARIEEQWS NRASDRGGRS KGVGKNIGDR NTAFFHRLAN ANRRSNYIGR IIIEGATHEY  420
ELMANSIVGF YKKLYKESEQ WRPRVDGLWL PSLDQEEGDL LIRPFQEEEV FEVVRKMRGD  480
KAPGPDGFSM AFLQHCWSVV KKDIMAVFDE VHADGDFEKS LKATFIVLIP KKNGALEIGD  540
YMPISLIGCI YKVLAKVLAR RMANVMDRLI SENQNAFVGD RQILDASLVT NECVNVRIKS  600
KDALVADCWS NSPTGGIWAP LFRRGVQDWE MEAFEGLFRM LQEAQPIIHD NDKWKWKRQA  660
KGTCTVSSFY QSLKGMGDPT FPCKGVWVSR VPNKGEPLCI FYSRYGSCKF GPSCKFDHPM  720
GVFTYNLAAS SSDNAPVVRR LLGSSSGAAA LALSSEGLVD GGSAKPRRLS LSESRQMASG  780
DDNIDTEG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.16e-35zinc finger nuclease 3