PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn368801
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 230aa    MW: 24797.6 Da    PI: 4.9115
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn368801genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.61.4e-2741133186
    trihelix   1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rWt++e+l+Li+++r  e+r+r g+       +++p+W++vs++++ +g++r+p+qC+++w+nl+++yk+ike+e + ++e++s +++ ++l+
  Achn368801  41 RWTRHEILVLIQGKRAAENRVRPGRasgsgqvQAEPKWAAVSSYCKNHGVNRGPVQCRKRWSNLAGDYKRIKEWELQVRDEAESFWAMRNDLR 133
                 8*********************8766677888**********************************************999999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.441105IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.8E-541104IPR009057Homeodomain-like
PfamPF138372.0E-1341129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MALEPLSLAS TPVDAVTTGG DGSPPTADGG DDVGRAPRLP RWTRHEILVL IQGKRAAENR  60
VRPGRASGSG QVQAEPKWAA VSSYCKNHGV NRGPVQCRKR WSNLAGDYKR IKEWELQVRD  120
EAESFWAMRN DLRRERKLPG YFDREVYDMI DGGTAAIETE AVEDSGRSAA AEDRLFSDFE  180
QTAPKEGGVG VGAGAEKVFA TAEVGPTPAP VPISELEPFG NDFCGLGWV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887986.15e-93trihelix transcription factor ASR3
SwissprotQ8VZ207e-74ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A2R6P2V21e-150A0A2R6P2V2_ACTCH; Trihelix transcription factor
STRINGevm.model.supercontig_2461.12e-92(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-76Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]