PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn369231
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 140aa    MW: 15236.2 Da    PI: 6.0955
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn369231genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY49.68.1e-1621582259
                EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY 22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                 +YYrCtsagCpv+k++er+ +++++++itY+g H+h+
  Achn369231 21 WNYYRCTSAGCPVRKHIERDVDNTSALIITYKGIHDHD 58
                57***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007742.7E-71159IPR003657WRKY domain
PfamPF031062.8E-102057IPR003657WRKY domain
SuperFamilySSF1182907.19E-132160IPR003657WRKY domain
PROSITE profilePS5081117.5232260IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-142260IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MDKLMLECGT FTQYAACSKS WNYYRCTSAG CPVRKHIERD VDNTSALIIT YKGIHDHDMP  60
VPKKRHGPPS APLIAAAAPA SMNNSQLKKT DANQDQVSAT QWSVDTEGEL MGEAVEAGEE  120
KAMESARTLL SIGFEIKQC*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154886.16e-62hypothetical protein PHAVU_003G156300g
SwissprotP595832e-46WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A2R6QHL79e-62A0A2R6QHL7_ACTCH; WRKY transcription factor
TrEMBLM1AS702e-62M1AS70_SOLTU; Uncharacterized protein
STRINGXP_007154886.12e-61(Phaseolus vulgaris)
STRINGPGSC0003DMT4000290694e-63(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91892127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.12e-40WRKY DNA-binding protein 32