PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn370131
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ZF-HD
Protein Properties Length: 190aa    MW: 21276.1 Da    PI: 6.8569
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn370131genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer57.92.3e-181462458
  ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                 v Y+eC +N Aa+ G ++ D C Ef+ s g     + l C+ CgCHRn+HR+e++
   Achn370131 14 VSYRECHRNFAARRGHYVGDACAEFVVS-G-----DDLLCSSCGCHRNYHRKEEV 62
                 89*************************9.4.....45***************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-91468IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047709.6E-171461IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152315.1881660IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.82E-11109175IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-19110175IPR009057Homeodomain-like
TIGRFAMsTIGR015656.0E-20116172IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MANNDNVRRC ATIVSYRECH RNFAARRGHY VGDACAEFVV SGDDLLCSSC GCHRNYHRKE  60
EVVVEVEPGI DQVLRQMAVA APLPQLPILT AHIPLPPPPE DDIPGDGEIE QELKPRKRDR  120
SRLTQAQREM MRLYAGRLGW SLQGHNEEEL LRFCSDIGII PQVFKVWMNN HRRKYANAGE  180
TSAATGGEA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108891118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.19e-26homeobox protein 22