PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn370431

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 871aa MW: 98484 Da PI: 6.8407

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn370431	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.3	1.7e-15	79	153	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA++vGFs+ + + +++k +g i++ +f Cs+e +++++ ++ C+a l++++++ + w+vtk++++HnH+++ Achn370431 79 LYDAYARRVGFSTHVGQYTRTKPDGPIVTWDFACSREVFKRKNVES--------------CNAVLRIERKDLDSWVVTKFVEDHNHSMV 153 69************************************999877..............************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-12	79	153	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.3E-30	285	377	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.362	562	598	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.6E-11	564	596	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-8	573	600	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 871 aa Download sequence Send to blast
MKTQGVDITH SSGMDVGVVG TEGDKREKNG KANSSRNMGE NQGMAENSSD REAHNQDNDE 60 NTKLYVGMEF ESEEAAKTLY DAYARRVGFS THVGQYTRTK PDGPIVTWDF ACSREVFKRK 120 NVESCNAVLR IERKDLDSWV VTKFVEDHNH SMVSPRKVHH LRPRRHFAGA TKNVVETVDA 180 PSDVFVSMDG NHVSYDPNRG VRSASPVETN SAAKSFGPMN YVQPCIRKKT LGRDAQNILN 240 YFKKMQAENP GFYYAIQLDD DNRMTNIFWA DARSRTAYSH FGDTVIFDTM YRPNQFLVPF 300 APFTGVNHHG QMVLFGCALL LDESESSFTW LFRTWLSAMN DQPPVSITTD QDRAIQAAVS 360 QVFPGTRHCI CKWHILREGQ ERLAHVYLAH PSFYGELYSC INFSETVEDF ESSWGSLLDR 420 YELRKNEWLQ AVYHARQQWA PVYFRGTFFA ALSSNQGVSS FFDGYVNQQT TIPMFFKQYE 480 RALENSLERE IEADYDTICT TLVLKTPSPM EQQAANLYTK KVFAKFQEEL VETFVYTANN 540 IEGDGVVSKF RVAKYEHDHK AYMVMLNMSE MKASCSCQMF EYSGILCRHI LTVFTVTNVL 600 TLPPHYILNR WTRNARIGFG SMEHDANNQC IESLTSRFKN LCREAIKYAE EGAIAAETYN 660 AAMTALRDGA RKIADVKKNV AKVTPPSSQG SGSTQEDCNK KTPISTFDTS PPLWPWQDVM 720 PQHFNLNDVG VPIADLNQPT IAPTSVSRDD GPDKTVVLTC FKSMTWVIED KNSTSSKVAV 780 INLKLQDYGK TPSGETEVQF RLTKVTLEPM LKSMAYISQQ LSASANRVAV INLKLQDTKT 840 TTGETEVKFQ VSRDTLGSML RSMAYIREQL *

Sequence ? help Back to Top

Protein Sequence Length: 871 aa Download sequence Send to blast

MKTQGVDITH SSGMDVGVVG TEGDKREKNG KANSSRNMGE NQGMAENSSD REAHNQDNDE  60
NTKLYVGMEF ESEEAAKTLY DAYARRVGFS THVGQYTRTK PDGPIVTWDF ACSREVFKRK  120
NVESCNAVLR IERKDLDSWV VTKFVEDHNH SMVSPRKVHH LRPRRHFAGA TKNVVETVDA  180
PSDVFVSMDG NHVSYDPNRG VRSASPVETN SAAKSFGPMN YVQPCIRKKT LGRDAQNILN  240
YFKKMQAENP GFYYAIQLDD DNRMTNIFWA DARSRTAYSH FGDTVIFDTM YRPNQFLVPF  300
APFTGVNHHG QMVLFGCALL LDESESSFTW LFRTWLSAMN DQPPVSITTD QDRAIQAAVS  360
QVFPGTRHCI CKWHILREGQ ERLAHVYLAH PSFYGELYSC INFSETVEDF ESSWGSLLDR  420
YELRKNEWLQ AVYHARQQWA PVYFRGTFFA ALSSNQGVSS FFDGYVNQQT TIPMFFKQYE  480
RALENSLERE IEADYDTICT TLVLKTPSPM EQQAANLYTK KVFAKFQEEL VETFVYTANN  540
IEGDGVVSKF RVAKYEHDHK AYMVMLNMSE MKASCSCQMF EYSGILCRHI LTVFTVTNVL  600
TLPPHYILNR WTRNARIGFG SMEHDANNQC IESLTSRFKN LCREAIKYAE EGAIAAETYN  660
AAMTALRDGA RKIADVKKNV AKVTPPSSQG SGSTQEDCNK KTPISTFDTS PPLWPWQDVM  720
PQHFNLNDVG VPIADLNQPT IAPTSVSRDD GPDKTVVLTC FKSMTWVIED KNSTSSKVAV  780
INLKLQDYGK TPSGETEVQF RLTKVTLEPM LKSMAYISQQ LSASANRVAV INLKLQDTKT  840
TTGETEVKFQ VSRDTLGSML RSMAYIREQL *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028099450.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X2
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2R6R1D8	0.0	A0A2R6R1D8_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	VIT_13s0047g00330.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]