PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn370551

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

GeBP

Protein Properties

Length: 353aa MW: 39882 Da PI: 5.1149

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn370551	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	111.4	6e-35	99	198	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 lfqrlw++eDei lL+G+++++ ++g ++++d+ afy++++++++++++k+ql++K+rrLKkK+++ ++k++sgke++f+++hd +fe+s+kiW Achn370551 99 LFQRLWTDEDEIELLRGFLEYTGRRGWfnssQQHQDTAAFYDQIRSKLQLDFNKNQLSDKLRRLKKKYRNVSSKIDSGKEFVFKSPHDYTTFEISRKIW 197 79**********************987666778************************************************************** PP DUF573 97 g 97 Achn370551 198 S 198 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.8E-32	100	198	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MASAEHHTVY GQNDLDDDSE DDPQEDHDED DTSSSYLAAG DVTVAVSGVR HGDPSAKGSG 60 VILALPYLKR ERVEDVAIEA EEEKKPSAAT ATADDSRRLF QRLWTDEDEI ELLRGFLEYT 120 GRRGWFNSSQ QHQDTAAFYD QIRSKLQLDF NKNQLSDKLR RLKKKYRNVS SKIDSGKEFV 180 FKSPHDYTTF EISRKIWSAT GGFEFEDPNP NPNLNVNPNS FGNNSNAVDT NSPQKRWRGE 240 KIEEKPQFSK PPHRFATPTD NSVSNLIEDT VRSCISPLFK ELVDNASGSR GFGRSAVLNP 300 MPVRSFNSMG GDMPDERWRK QQILELEVYS KRLALVQDQI KLALEELRSM GK*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MASAEHHTVY GQNDLDDDSE DDPQEDHDED DTSSSYLAAG DVTVAVSGVR HGDPSAKGSG  60
VILALPYLKR ERVEDVAIEA EEEKKPSAAT ATADDSRRLF QRLWTDEDEI ELLRGFLEYT  120
GRRGWFNSSQ QHQDTAAFYD QIRSKLQLDF NKNQLSDKLR RLKKKYRNVS SKIDSGKEFV  180
FKSPHDYTTF EISRKIWSAT GGFEFEDPNP NPNLNVNPNS FGNNSNAVDT NSPQKRWRGE  240
KIEEKPQFSK PPHRFATPTD NSVSNLIEDT VRSCISPLFK ELVDNASGSR GFGRSAVLNP  300
MPVRSFNSMG GDMPDERWRK QQILELEVYS KRLALVQDQI KLALEELRSM GK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028114872.1	1e-105	probable transcription factor At5g28040
Swissprot	F4K5T4	1e-70	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	A0A2R6R1G0	0.0	A0A2R6R1G0_ACTCH; Transcription factor
STRING	Solyc02g083750.1.1	1e-94	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4052	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	6e-70	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]