PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn372411
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 101aa    MW: 11328.7 Da    PI: 9.8759
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn372411genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.24.9e-101458344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT++  +l+ +a +++ ++   +W  +ar +g g++++++k ++
       Achn372411 14 SWTPQQNKLFEQALARYDKDtpdRWQNVARAVGGGKSAEEVKRHY 58
                     7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.4421066IPR017884SANT domain
SMARTSM007171.0E-81164IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-41263IPR009057Homeodomain-like
SuperFamilySSF466891.57E-121369IPR009057Homeodomain-like
CDDcd001671.05E-61462No hitNo description
PfamPF002498.6E-81458IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MVIMESSRRP SGSSWTPQQN KLFEQALARY DKDTPDRWQN VARAVGGGKS AEEVKRHYDL  60
LLEDLVRIET GRVPIPNYRG NANERIKGNG YANHIPMTSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-28679274RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028054260.14e-40protein RADIALIS-like 3 isoform X2
RefseqXP_028054262.13e-40protein RADIALIS-like 3 isoform X3
RefseqXP_028086230.14e-40protein RADIALIS-like 3
SwissprotQ1A1731e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2R6R1M06e-54A0A2R6R1M0_ACTCH; Protein RADIALIS-like (Fragment)
STRINGGSMUA_Achr2P23000_0018e-38(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.13e-37RAD-like 6