PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn373271

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 226aa MW: 24320.6 Da PI: 7.6889

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn373271	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.5	5.1e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++Cvl+ + p++q +++ +v+k+FG++ ++++l+++p ++r+++++sl++eA+ r+ +Pv+Gavg++++++++ +q+++++ Achn373271 2 SCNGCRVLRKGCSDNCVLRTSLqwiesPEAQGHATVFVAKFFGRAGLMSFLSSIPVNQRSALFQSLLFEACGRTVNPVNGAVGLLWTGNWHACQAAVQT 100 6***********************************************************************************************998 PP DUF260 95 all 97 +l+ Achn373271 101 VLR 103 776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.965	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.4E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MSCNGCRVLR KGCSDNCVLR TSLQWIESPE AQGHATVFVA KFFGRAGLMS FLSSIPVNQR 60 SALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHACQAAVQT VLRGGALRPI PKFLAGGALS 120 PPDLDDPSEA EVTCTDMFNI HQNPSPIPKS KAPKRRQVNE RAENQLADLG LSLTPRSAVE 180 EMSSKNSGEK RRDGTPSMNS EESVTTTCFE SSGFGAEPKL LNFFD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028075140.1	1e-111	LOB domain-containing protein 37-like
Swissprot	Q9SN23	6e-78	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A2R6S186	1e-164	A0A2R6S186_ACTCH; LOB domain-containing protein
STRING	VIT_07s0129g00330.t01	5e-96	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	3e-80	LOB domain-containing protein 38