PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn374511
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 190aa    MW: 21297.6 Da    PI: 11.6707
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn374511genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.90.0002122163854
                 HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +E++R   +  ++  Lr+l+P +     +K s    Le+A++YI  L
  Achn374511 122 AEKKREPVLQRKLRVLRRLVPGC-----RKISFPNLLEEATDYIAAL 163
                 688999999999**********9.....8***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.309114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-9121180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-7122175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MASYSISNPE TNANRSHESK RKKRRKIEGE NHAEAVTIEK NRWKTATEQQ IYSTKLIEAL  60
RQSRRTSSSP ATAVRETADR VLAAAARGKT RWSRAILTSR LRPQLGHKKV KATGGVRWKK  120
PAEKKREPVL QRKLRVLRRL VPGCRKISFP NLLEEATDYI AALEMQIRAM ATLAESLSGP  180
SVRLGSDLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11925KRKKRRK
22125KKRRK
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor probably unable to bind DNA. Negatively regulates brassinosteroid signaling. {ECO:0000269|PubMed:20023194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028061682.17e-75transcription factor bHLH149-like
RefseqXP_028061683.17e-75transcription factor bHLH149-like
SwissprotO804824e-41BH149_ARATH; Transcription factor bHLH149
TrEMBLA0A2R6RFS71e-132A0A2R6RFS7_ACTCH; Transcription factor bHLH149 like
STRINGXP_009609092.13e-54(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA143122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06590.22e-26bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]