PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn376131

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

MYB_related

Protein Properties

Length: 165aa MW: 18800.2 Da PI: 5.0234

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn376131	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.4	1.6e-08	16	52	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd ll+++vk++G g ++R +k+ ++rw +y Achn376131 16 KGPWTAEEDSLLIEYVKLHGEG----------LKRNGKSSRLRWVNY 52 79******************99..........344445556666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.888	11	57	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.1E-12	12	56	IPR009057	Homeodomain-like
SMART	SM00717	7.0E-5	15	55	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-6	16	53	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.84E-15	17	80	IPR009057	Homeodomain-like
CDD	cd00167	1.00E-5	18	53	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.6E-8	57	79	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MADNLGWGVI EEGWRKGPWT AEEDSLLIEY VKLHGEGLKR NGKSSRLRWV NYLRPDLKRG 60 QITPHEENII LELHAKWGNS ENRVPYLPQA KQDMVTLYPN NTAGEEQDFL YPLFNGYMSL 120 PEAPNHEENI LWDGLWNLDD IHGNWSMACA ANKAGLHTLA TPFC*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	P81396	4e-25	MYB40_ANTMA; Myb-related protein 340
TrEMBL	A0A2R6R8Y5	2e-55	A0A2R6R8Y5_ACTCH; Transcription factor like
STRING	Gorai.005G054900.1	2e-40	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17516	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	5e-39	myb domain protein 305

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]