PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn376241

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

TCP

Protein Properties

Length: 122aa MW: 13450.4 Da PI: 7.5122

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn376241	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	77.5	3.6e-24	11	71	5	65
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt 65 +++++++h kv+gRdRRvR++++caa +F+L ++LG+ ++++tieWLl +a+p++ + ++ Achn376241 11 QKTSKDRHIKVDGRDRRVRIPVKCAALIFELSKRLGHRTAGQTIEWLLHEAEPSVTLAFSN 71 5789**************************************************9877666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.6E-22	13	70	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	20.219	14	68	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MCPKSNSSNH QKTSKDRHIK VDGRDRRVRI PVKCAALIFE LSKRLGHRTA GQTIEWLLHE 60 AEPSVTLAFS NPCSVLASLP VFVPPSNPPP PPPVVAPSGE LDNFSFDFDD ANDFMSFPMF 120 F*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028052561.1	2e-27	transcription factor TCP8-like
TrEMBL	A0A2R6PEX2	6e-24	A0A2R6PEX2_ACTCH; Transcription factor like
STRING	XP_002529440.1	6e-22	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	4e-22	TCP family protein