PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn376871

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 145aa MW: 16833.4 Da PI: 10.8187

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn376871	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.8	4.5e-29	36	123	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA++ GF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra t gCka+++ kkek+gkw+vt++++eHnH+l+ Achn376871 36 FYDAYATRFGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKYRPRR-SENRKPRAITSEGCKAMIVAKKEKTGKWVVTRFVKEHNHPLV 123 9*****************************************99.9*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-27	36	123	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MIERSNGKEL VSSEENSDLE PFVGMEFESE EVAKVFYDAY ATRFGFIMRV DAFRRSMRDG 60 KVVWRRLVCN KEGFRKYRPR RSENRKPRAI TSEGCKAMIV AKKEKTGKWV VTRFVKEHNH 120 PLVVAPTNNR RSVFLSQTPV RITT*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023913236.1	1e-87	protein FAR1-RELATED SEQUENCE 5-like isoform X2
Swissprot	Q9SZL8	4e-29	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2R6P6M2	6e-91	A0A2R6P6M2_ACTCH; Protein FAR1-RELATED SEQUENCE like (Fragment)
STRING	XP_002527271.1	9e-86	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12791	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-60	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]