PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn377111
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 248aa    MW: 28073.7 Da    PI: 4.627
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn377111genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.62.4e-2484172190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 +fY eYA+++GF vr+ + + s+++g+i++r++ C+k+g++ +  +     +++++  r gCka++ +k+ek+gkw+v+++++eHnH+l+
  Achn377111  84 RFYFEYARKIGFVVRIMQRRCSETDGRIVSRRLGCNKQGFSPNYGTI-GPDKKPKSCAREGCKATILMKLEKSGKWVVSRFVKEHNHPLV 172
                 59**************************************9998887.99**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-2284172IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MLVDNFLVDL DKREGALDNP TQVNISVCDG AEVQEPHVGM EFDLDEQEGA LDILTEGNII  60
VCDEAEVQEP YVGMEFDSED DAKRFYFEYA RKIGFVVRIM QRRCSETDGR IVSRRLGCNK  120
QGFSPNYGTI GPDKKPKSCA REGCKATILM KLEKSGKWVV SRFVKEHNHP LVVTEQGLST  180
YGDKDNKIEQ LTRELRRQDQ LCAAYREILQ KFLTSIEEQA DQLSTKIQDV VQNVREVEAE  240
AQTTLSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028120634.11e-107protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLA0A2R6QJL61e-177A0A2R6QJL6_ACTCH; Protein FAR1-RELATED SEQUENCE like (Fragment)
STRINGEOX937223e-88(Theobroma cacao)
STRINGevm.model.supercontig_8.542e-88(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA116022025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.13e-63FAR1 family protein