PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn377781
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 359aa    MW: 38912.7 Da    PI: 7.8534
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn377781genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.23.3e-09107129326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 ++lC+++ + G C yGdrC++ H+
  Achn377781 107 EKLCNYWVQ-GKCTYGDRCRYLHS 129
                 579******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.21944IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.7611945IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.46104131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-7104129IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5106130IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-7107129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-7108127IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.69E-23122350IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.106.5E-21128350IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM0032011181218IPR001680WD40 repeat
PROSITE profilePS5029411.814188271IPR017986WD40-repeat-containing domain
SMARTSM003200.49225262IPR001680WD40 repeat
PROSITE profilePS500829.606232261IPR001680WD40 repeat
SMARTSM0032027266309IPR001680WD40 repeat
SMARTSM003202.3312349IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDLEGNKRVF HRLGPSSDDR NQKVCYHWRA GKCDRFPCPY LHRELPQQAK NGTASSKRPL  60
GFSDDQQVGR RNPNFGNNSS SWGRPHGGRG GGRGGGDGGS EIVKKAEKLC NYWVQGKCTY  120
GDRCRYLHSW STGGFSLLTE LEGHQECAGV INLGGEVGCM LSEGPWVFVG LPNVVKAWNI  180
QTTADLSLSG PVGQVYTLVV GNDLLFAGTQ DGTILAWRFN AATNCFDPAA TLKSHTLAVV  240
TLVVGANRLY SGSVDNSIRV WVATESGNLE VTYTHNEEHG LLTLCGMHDS EAKPVLLCSC  300
NDNSVRAYDL PSFLERGKIF AKQEVRSIQI GPGGLFFTGD GTGKVRVWNW LAEPTATA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028065236.10.0zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ21e-158C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A2R6RSV90.0A0A2R6RSV9_ACTCH; Zinc finger CCCH domain-containing protein
STRINGEMJ192311e-175(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-158zinc finger WD40 repeat protein 1