PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn378471
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 329aa    MW: 35967.9 Da    PI: 9.0462
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn378471genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.6e-18172226256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++k+q   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Achn378471 172 RKKLRLSKDQSAYLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 226
                 788899***********************************************98 PP
2HD-ZIP_I/II1278.2e-41172262192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlsk+q++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
   Achn378471 172 RKKLRLSKDQSAYLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-ALK 262
                  69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.5E-726128IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466894.71E-18163229IPR009057Homeodomain-like
PROSITE profilePS5007116.763168228IPR001356Homeobox domain
SMARTSM003898.0E-15170232IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.3E-17172226IPR009057Homeodomain-like
CDDcd000866.91E-15172229No hitNo description
PfamPF000461.7E-15172226IPR001356Homeobox domain
PROSITE patternPS000270203226IPR017970Homeobox, conserved site
SMARTSM003401.2E-23228272IPR003106Leucine zipper, homeobox-associated
PfamPF021837.2E-11228262IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MNESGDPSRP FGFLPKNREV NNNNNSHGLG FCMSLGINGS GTTGRQQLER EKSTTDESQR  60
GSRNRDDPTA HIGPPFQLDL LPLSPLPRHT SSHGSSEVRG FDVNRLPTAA AEDGVAAASS  120
PNSGASSFQM DLWSVGGSKR GSPESAGGND GGGDAERASS RVSDDDDNGL SRKKLRLSKD  180
QSAYLEESFK EHSTLNPKQK LALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC  240
CETLTEENRR LHKELQELRA LKNTSNPFYM QLPATTLTMC PSCERVAAAV TPNITDVSSK  300
AAAPFPLARQ RLYPFSRSQS QPHPSAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170176SRKKLRL
2220228RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028075617.11e-125homeobox-leucine zipper protein HOX11-like
SwissprotA2YW031e-85HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
SwissprotP466651e-85HAT14_ARATH; Homeobox-leucine zipper protein HAT14
SwissprotQ6YPD01e-85HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBLA0A2R6QKU90.0A0A2R6QKU9_ACTCH; Homeobox-leucine zipper protein
STRINGEOY095241e-110(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-69homeobox from Arabidopsis thaliana