PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn378631
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 261aa    MW: 29160.6 Da    PI: 4.8303
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn378631genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-0867952046
                     TTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 20 Ggg...tWktIartmgkgRtlkqcksrwqk 46
                     Gg+   +W+ Ia++++ gRt++++k++w++
       Achn378631 67 GGHntlRWSQIAARLP-GRTDNEIKNFWNS 95
                     5556779*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.1E-858102IPR009057Homeodomain-like
PROSITE profilePS500906.4236897IPR017877Myb-like domain
PfamPF002491.4E-66995IPR001005SANT/Myb domain
CDDcd001673.56E-66997No hitNo description
Gene3DG3DSA:1.10.10.601.5E-1172102IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAGFEMAGEP KIDEVKVEEL LGGEKDQSID LKGKKIGSLD SPFSHEKPKW TSTFSHTTIC  60
TGTLTFGGHN TLRWSQIAAR LPGRTDNEIK NFWNSTVKKR LKNISTDLSS KPRDHASGRL  120
IMSMQDHHNA MHGMVTANCF NPNFPLLDNN YDLMPYLQQV GIEDYGIVEG GVMGLERDFS  180
IPQLESRGVV ENNNAGGDYN FDEKIVNDKG FNISEGIKLE DVFGFGNHWQ GENLKMGDNW  240
DLEGLLENVS SFPYLDFHVE *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028091328.19e-58transcription factor MYB83-like
TrEMBLA0A2R6QKT81e-134A0A2R6QKT8_ACTCH; Transcription factor like
STRINGPOPTR_0001s27430.16e-48(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.14e-24myb domain protein 83