PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn378771
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 730aa    MW: 78459.8 Da    PI: 5.6692
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn378771genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07309329526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C++f++ G C++Gd C +aHg
  Achn378771 309 PCPDFRK-GACRRGDMCEYAHG 329
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.75E-1733166IPR020683Ankyrin repeat-containing domain
CDDcd002047.26E-1436162No hitNo description
SMARTSM0024821003766IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.202.6E-1739164IPR020683Ankyrin repeat-containing domain
PfamPF127965.7E-1145153IPR020683Ankyrin repeat-containing domain
SMARTSM002480.003484114IPR002110Ankyrin repeat
PROSITE profilePS5029717.26384160IPR020683Ankyrin repeat-containing domain
PRINTSPR014151.5E-585100IPR002110Ankyrin repeat
SMARTSM002485.0E-5119151IPR002110Ankyrin repeat
PROSITE profilePS5008812.689119154IPR002110Ankyrin repeat
PRINTSPR014151.5E-5138152IPR002110Ankyrin repeat
SMARTSM003564.0E-6304330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-5308331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582309331IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-5309329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-4336367IPR000571Zinc finger, CCCH-type
SMARTSM0035641339362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MCSGPEQSKS ASSSSPASVE NNSNTNDMTQ LTVDTSDSFS SLLELAANND FEGFKLLMEQ  60
DPSPIDGVGL WYGRKKGSKQ IALEHRTPLM VAATYGSIDV LKLILSQSEV DVNLSCGFDK  120
STALHCAASG GSVNAVDVVK LLLSAGADPN SMDAGGLRPV DVIVVSPKLL SMRAALEELL  180
ANSVFDGSVG DHNLRVSITT SNSNSPTLSS SPGNGSPCSP SDSVSSPMGA KFNDLPSITG  240
SEKKEYPIDP SLPDIKNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKYHYSCVPC PDFRKGACRR GDMCEYAHGV FESWLHPAQY RTRLCKDDTS CARRVCFFAH  360
TPEELRPLYV STGSGVSSPR SNAASASAMD MAAALNLLPG SPSSLMSPSP FNQPMSPSGN  420
GISHSSMGWP QPNVPTLNLP GSNLQSSRLR SSLNARDIAL ENMNMLPDFD AQNLLNDLAC  480
FSQTRSNPAS LNRSCLTKTL TPSNLEELFS AEIASSPRYS DQTAACGVFS PSHKSAVLSQ  540
FQQQQNILSP INTNVFSPKN VERPLLQASF GVSSPRGVSP RGVEPICPMS ARLSVIAQRE  600
NQYQQLRSLS SRELGYNPSA SIVGSPVNPV SKWGSPNGKA DWSVNGSEMG RLRRTSSFEL  660
NCNGEEPDLS WVQSLVKESP SEMKDNLAVP VSGISSSGEA VEPNSQVESV DHSVLGAWLE  720
QMQLDQLVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17279GRKKGSKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021281461.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_021281462.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_021281463.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2R6RA820.0A0A2R6RA82_ACTCH; Zinc finger CCCH domain-containing protein
STRINGEOX966900.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]