PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn378921
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 260aa    MW: 27216.7 Da    PI: 8.5756
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn378921genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72e-086590227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                kt+lC+ f     Ck+Gd+C+FaHg+
  Achn378921 65 KTKLCNKFNSAEGCKFGDKCHFAHGE 90
                89**********************96 PP
2zf-CCCH32.31.6e-10226250126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+ C +fa+ G C +G+rC+FaHg
  Achn378921 226 FKTKVCEHFAK-GSCTFGERCHFAHG 250
                 69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.141126IPR000571Zinc finger, CCCH-type
SMARTSM0035628225IPR000571Zinc finger, CCCH-type
PfamPF146080.451323No hitNo description
Gene3DG3DSA:4.10.1000.103.4E-146294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-86293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5636391IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-46390IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-66590IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.24E-16128211IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.109.2E-17133205IPR004088K Homology domain, type 1
SMARTSM003228.5E-13133203IPR004087K Homology domain
PROSITE profilePS5008414.802134198IPR004088K Homology domain, type 1
CDDcd001051.06E-15136198No hitNo description
PfamPF000137.2E-11136200IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.9E-15223255IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-9224255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.69225252IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-7225251IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-8226250IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGFSGPWCST SGCSFGDSCH FLHYVPGGYS AMAQMTNQGG NPSIPPARNA LAPPPFTDSP  60
TPTVKTKLCN KFNSAEGCKF GDKCHFAHGE MELGRPGIPA YENPRGMGSM PGRFSGRGGP  120
PQPSSAATAN FGASATAKIS IDASLAGAVI GKGGVNSKQI CRITGVKLSI KEHESDPNQR  180
NIELEGTFDQ INQASSMVRE LINNVAAATH HHPPAKPTMA APANNFKTKV CEHFAKGSCT  240
FGERCHFAHG ANELRNSLA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028111176.11e-129zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R06e-94C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2R6QKW70.0A0A2R6QKW7_ACTCH; Zinc finger CCCH domain-containing protein
STRINGVIT_13s0156g00320.t011e-120(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.17e-59C3H family protein