PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn379311

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 392aa MW: 43459 Da PI: 5.992

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn379311	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.3	1.8e-05	282	320	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYI+ L Achn379311 282 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYINFL 320 5778999********998.....8*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.22	271	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-9	281	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-11	281	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.04E-6	281	325	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MADEFQNWWA TGSSASSSSS ALTSVGSFGW PAEMADIKAS SSMDLTLSSQ AMDWNHQTIL 60 RVGKAESSFR SAIQEDLNSS TNFQPEAGIG SSSQEQWREK IYSRGSEDSS VNEYKQINRD 120 FLMDQPQFGS QISSTSFQMD PTTFQGLLSS ENQQQQSHFE NQPMNNYQYQ ASYGVNTGEL 180 LPSSWSKFPQ FTRSSPPKQP PHSPLQFSNN APFWNATSAP MNEVRSSFFP ASLQTQLPPP 240 TFDEKPKNTL ELVAKKSSSS SSEASNKRPR NETPSPLPAF KVRKEKMGDR ITALQQLVSP 300 FGKTDTASVL SEAIEYINFL HEQVSVLSTP YMKSGASMQH QQISDKSKEP EKAKQDLRSR 360 GLCLVPVSST FPVTHEATVD FWNPTFGGTF R*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MADEFQNWWA TGSSASSSSS ALTSVGSFGW PAEMADIKAS SSMDLTLSSQ AMDWNHQTIL  60
RVGKAESSFR SAIQEDLNSS TNFQPEAGIG SSSQEQWREK IYSRGSEDSS VNEYKQINRD  120
FLMDQPQFGS QISSTSFQMD PTTFQGLLSS ENQQQQSHFE NQPMNNYQYQ ASYGVNTGEL  180
LPSSWSKFPQ FTRSSPPKQP PHSPLQFSNN APFWNATSAP MNEVRSSFFP ASLQTQLPPP  240
TFDEKPKNTL ELVAKKSSSS SSEASNKRPR NETPSPLPAF KVRKEKMGDR ITALQQLVSP  300
FGKTDTASVL SEAIEYINFL HEQVSVLSTP YMKSGASMQH QQISDKSKEP EKAKQDLRSR  360
GLCLVPVSST FPVTHEATVD FWNPTFGGTF R*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018852142.1	1e-164	PREDICTED: transcription factor bHLH123-like isoform X2
Swissprot	Q8GXT3	1e-72	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A2R6QWW4	0.0	A0A2R6QWW4_ACTCH; Transcription factor bHLH123 like
STRING	EOY12661	1e-159	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	2e-74	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]