PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn381591
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 380aa    MW: 41181.2 Da    PI: 7.4696
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn381591genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.93e-125479126
                --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                ++++ C++++rtG C yG++CkF+H+
  Achn381591 54 PGEPDCMYYLRTGLCGYGSKCKFNHP 79
                5789*********************9 PP
2zf-CCCH30.18.2e-1085104827
                 GGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                 f+++tGtCkyG  Ck++H++
  Achn381591  85 FYLKTGTCKYGLACKYHHPR 104
                 9*****************96 PP
3zf-CCCH38.42.1e-12127149527
                 --SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                 +C+f++rtG Ck+G  CkF+H++
  Achn381591 127 PCPFYMRTGLCKFGVACKFHHPQ 149
                 8********************97 PP
4zf-CCCH36.86.3e-12280305227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++Cr+f+ tG+CkyG+ Ck++H++
  Achn381591 280 DQPECRHFMSTGICKYGSDCKYHHPK 305
                 689*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.1365381IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-65380IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-105579IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-65881IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-55978IPR000571Zinc finger, CCCH-type
SMARTSM003560.08981104IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-785104IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.94885105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.521122150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6123150IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5123149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4127148IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-10127149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.061278306IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5278305IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-10280305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-7281307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5284305IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MPDNHQVQSN GGVSNSSDQL VDNLEEDIKR LEIQTNDNQD SGAVENCCPY PDRPGEPDCM  60
YYLRTGLCGY GSKCKFNHPT STGNFYLKTG TCKYGLACKY HHPRDKNGGK PAPLNILGLP  120
MRQDGNPCPF YMRTGLCKFG VACKFHHPQP AGAGPALPIP GPAACGSSSS SFVPPSCLHF  180
VGGFSALSLP RASYIPGSHV QVPQTYMPVV MSPSQSIGPT HGWNTYLCSN VKQEYTIPVS  240
SSSVLGSDLV CNFKNQGESS SNGLMHWSPT STPHLPERPD QPECRHFMST GICKYGSDCK  300
YHHPKEKIAQ LTTSSLGPLG LPLRPRNPPT VLSFETSPTK PSKVTDWVRK PEVTSNHHQN  360
PDIETPENPS EQASSPPND*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028107627.11e-168zinc finger CCCH domain-containing protein 3-like isoform X3
TrEMBLA0A2R6PQH50.0A0A2R6PQH5_ACTCH; Zinc finger CCCH domain-containing protein
STRINGVIT_12s0059g01450.t011e-146(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135711016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-69C3H family protein