PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn383061
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 161aa    MW: 17539 Da    PI: 9.2277
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn383061genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00142951123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ C++ Fs+   L  H  +H
  Achn383061 29 FECKTCSRQFSSFQALGGHRASH 51
                89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.97E-92799No hitNo description
PfamPF139123.3E-122953IPR007087Zinc finger, C2H2
SMARTSM003550.422951IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.182956IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
PfamPF139125.2E-976101IPR007087Zinc finger, C2H2
SMARTSM0035517799IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.95477104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MANCLMLLSR SSSSELAATS DSLQSRRIFE CKTCSRQFSS FQALGGHRAS HKKPRLMDGD  60
SNQRAQSESS PAKPKTHACS ICGLEFAIGQ ALGGHMRRHR AAAASSESQS PELPLFPSQV  120
HVVKRSNSRR VLCLDLNLTP LENGLDFPLE KVSPMLHCYL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018810023.12e-60PREDICTED: zinc finger protein ZAT11-like
RefseqXP_018836539.12e-60PREDICTED: zinc finger protein ZAT11-like
TrEMBLA0A2R6RTF81e-112A0A2R6RTF8_ACTCH; Zinc finger protein
STRINGXP_009593204.14e-59(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.19e-33C2H2 family protein