PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn383981

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

YABBY

Protein Properties

Length: 158aa MW: 17430 Da PI: 6.2235

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn383981	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	80.6	4.7e-25	6	66	4	64
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshld 64 + ++eq+Cy+ CnfCn +lavsvP + lf +vtvrCGhCt+l svn+a a q+la +++ + Achn383981 6 DVAPEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCTNLWSVNMAAAFQTLAWQDDHQ 66 5789***********************************************9999988644 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.1E-26	8	67	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MSSYVDVAPE QLCYIPCNFC NIVLAVSVPC SNLFDIVTVR CGHCTNLWSV NMAAAFQTLA 60 WQDDHQAPSY GAPDCRIDFG SSRTPITNTS EGRAPNRRIR EAPNVQAFLN AQMKAFVIRE 120 IHNVELKNAL DLISYGIRLK TISLIFIVFV ASCLEDA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006450895.1	4e-48	axial regulator YABBY 5 isoform X1
Refseq	XP_006475868.1	4e-48	axial regulator YABBY 5 isoform X1
TrEMBL	A0A2R6QRV8	1e-67	A0A2R6QRV8_ACTCH; Axial regulator YABBY like
STRING	XP_006475868.1	2e-47	(Citrus sinensis)
STRING	XP_006450895.1	2e-47	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	6e-34	YABBY family protein