PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn384131

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

G2-like

Protein Properties

Length: 161aa MW: 18091.7 Da PI: 10.2448

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn384131	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.6	1.6e-34	16	70	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Achn384131 16 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 70 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.485	13	73	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-18	15	71	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.3E-33	15	71	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-26	16	71	IPR006447	Myb domain, plants
Pfam	PF00249	3.8E-10	18	69	IPR001005	SANT/Myb domain
Pfam	PF14379	7.3E-10	102	123	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MIGGNSLDNN PSLASKQRLR WTHELHERFV DAVAQLGGPD RATPKGVLRV MGVQGLTIYH 60 VKSHLQKYRL AKYLPDSSSD GNKADKKESE DMLSSLDGSS GMQITDALKL QMEVQKRLHE 120 QLEGFRTTIT TIGYAVQKMG RYKVGILEWR KWRTIVGEHK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-25	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-25	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-25	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-25	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00628	PBM	Transfer from PK10342.1	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010647085.1	1e-79	PREDICTED: myb family transcription factor PHL7 isoform X1
Refseq	XP_010647087.1	1e-79	PREDICTED: myb family transcription factor PHL7 isoform X1
Refseq	XP_019074066.1	1e-79	PREDICTED: myb family transcription factor PHL7 isoform X1
Swissprot	Q9SJW0	6e-71	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2R6PYK4	3e-83	A0A2R6PYK4_ACTCH; Myb family transcription factor
STRING	VIT_00s0475g00040.t01	4e-79	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2796	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-73	G2-like family protein