PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn385251
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 222aa    MW: 24016.5 Da    PI: 6.6824
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn385251genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.87.9e-342197269
         TCP  2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssss 69
                a +kdrhsk+ T++g+RdRR+R+sa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+ l+++         ++++
  Achn385251 21 ASRKDRHSKVFTAKGPRDRRIRISAHTAIQFYDIQDRLGYDRPSKAVDWLMKKAKTAIDNLAELppwnpsdsgTNPA 97
                789*************************************************************7766555532222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.7E-312292IPR005333Transcription factor, TCP
PROSITE profilePS5136931.2062381IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MKNSGGGEIV QVQGGHILRS ASRKDRHSKV FTAKGPRDRR IRISAHTAIQ FYDIQDRLGY  60
DRPSKAVDWL MKKAKTAIDN LAELPPWNPS DSGTNPAPSE ITVSPPNLES TSEYGFQIQG  120
HFGQTTDIQP VGDPMKSFFP ASTDRQDLCL SLHSLRDPSS DPSPTDRALF QAAAPVDFQA  180
NYAAWNGGGG TGENIFGAAQ PFFSQRGDPS VQSFTSGSYV E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-202881154Putative transcription factor PCF6
5zkt_B1e-202881154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028073651.13e-68transcription factor TCP4-like
SwissprotQ9MAH84e-48TCP3_ARATH; Transcription factor TCP3
TrEMBLA0A2R6QXG81e-153A0A2R6QXG8_ACTCH; Transcription factor like
STRINGVIT_12s0028g02520.t012e-62(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.37e-50TCP family protein
Publications ? help Back to Top
  1. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]