PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn385691
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 245aa    MW: 27588.1 Da    PI: 7.9101
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn385691genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM25.14.8e-0862117149
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpk 49 
                 lp+G++F+P+d+el+ e+L++k+ ++ ++l+        +++   +i++++P++Lp 
  Achn385691  62 LPAGVKFDPSDQELL-EHLEAKAWSDACKLHPlidefipTLQGEdGICYTHPERLPG 117
                 799************.99****999995543333333333444436*********94 PP
2NAM36.71.2e-1111715987128
         NAM  87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                 gk++++l+ +g+++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Achn385691 117 GKTRPILH-NGKVKGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 159
                 899*****.999***********6658999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-2657178IPR003441NAC domain
PfamPF023651.0E-863159IPR003441NAC domain
PROSITE profilePS510059.766117178IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MTWCSDCSDE PAIVRRSSHP SSIDNVTVVA GKPLCHRTKS CPSCGHQINC QEKTGIHDLP  60
NLPAGVKFDP SDQELLEHLE AKAWSDACKL HPLIDEFIPT LQGEDGICYT HPERLPGKTR  120
PILHNGKVKG YKKILVLYTN YGKQKKPEKT NWVMHQYHLG NNEDERDGEL VVSKVFYQTQ  180
PRQCGSITKE TSPKKSKGRT GHQSPQFNDH NTRVEYCNPS LISFDQHDCE RASSRPVIPN  240
FNVM*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109188.11e-125NAC domain-containing protein 73-like
SwissprotO494599e-82NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2R6QXJ01e-174A0A2R6QXJ0_ACTCH; NAC domain-containing protein
STRINGVIT_12s0028g03050.t011e-104(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.14e-84NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]