PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn387031
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 200aa    MW: 20715.3 Da    PI: 9.489
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn387031genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.74e-132448327
                S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                ++ C++++rtGtCk+G++Ck++H++
  Achn387031 24 QPVCQYYMRTGTCKFGASCKYHHPR 48
                689********************96 PP
2zf-CCCH33.38.4e-1193115426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 +lC ++a++  Ck+G++CkF H+
  Achn387031  93 PLCTHYAQNRVCKFGPSCKFDHP 115
                 89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.4E-72148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.9572149IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-102448IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-72448IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-62648IPR000571Zinc finger, CCCH-type
SMARTSM003560.005989116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.87389117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-591117IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-893115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-594114IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MKTNCQIVGS LGAGRGEYPE RAGQPVCQYY MRTGTCKFGA SCKYHHPRQG GGSAIPVALN  60
YSGYPLRQLA VARPSSLHAL DGARQQPCFR GAPLCTHYAQ NRVCKFGPSC KFDHPVGPMS  120
CSSSASSLAD MPVAPYPVGS SKGTLAPSSS SSDLRPELIS GSNKDTLSTR MSSSTSSSSG  180
SVGSILSKSG PAPHPSVQQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019179746.15e-60PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X3
TrEMBLA0A2R6P4E41e-60A0A2R6P4E4_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_006489144.13e-54(Citrus sinensis)
STRINGXP_006419655.13e-54(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.15e-31C3H family protein