PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn387871
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 291aa    MW: 33770.7 Da    PI: 5.486
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn387871genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.2e-1956108456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++++ +q+++Le++Fe ++++ ae++ ++A +lgL+ rqV +WFqNrRa++k
  Achn387871  56 KRRLSFDQVKALEKVFEVDNKLEAEQKVKIAGELGLQPRQVAIWFQNRRARWK 108
                 4567889*********************************************9 PP
2HD-ZIP_I/II118.63.4e-3855143290
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  kkrrls +qvk+LE+ Fe ++kLe e+Kv++a eLglqprqva+WFqnrRAR+ktkq+E++y +L+++y+ lk + e+Leke e L +e
   Achn387871  55 KKRRLSFDQVKALEKVFEVDNKLEAEQKVKIAGELGLQPRQVAIWFQNRRARWKTKQMEREYGVLRDNYEDLKLKFEKLEKEREGLMAE 143
                  9**********************************************************************************999866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.27E-1941112IPR009057Homeodomain-like
PROSITE profilePS5007116.77950110IPR001356Homeobox domain
SMARTSM003894.5E-1753114IPR001356Homeobox domain
CDDcd000863.30E-1555111No hitNo description
PfamPF000461.3E-1656108IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-1862109IPR009057Homeodomain-like
PRINTSPR000314.3E-58190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000314.3E-590106IPR000047Helix-turn-helix motif
PfamPF021831.7E-10110143IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MKRFISPETL GSMVYPPQEK KNRKNDLPYS SEFLAMLDRL DNEDGTEEIG QSAGKKRRLS  60
FDQVKALEKV FEVDNKLEAE QKVKIAGELG LQPRQVAIWF QNRRARWKTK QMEREYGVLR  120
DNYEDLKLKF EKLEKEREGL MAEFLVSSLQ LKHLRSKLGE ENTETNHSAK EDFPKLEAKN  180
NVSEQNEFSL TATNQDFEIQ NNGSSSETKS HVGFRDGFEK SNCSEVFLES DPSSCVYSTW  240
MNHYFPYLAP SGVQVHPHQL VKMEEQNMFY GEDSFSIFSV DQTPTFHWQH *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102110RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028074224.11e-103homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A2R6R2X00.0A0A2R6R2X0_ACTCH; Homeobox-leucine zipper protein like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129391620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.25e-36homeobox protein 5